Logical Depth
Aligner is an implementation of the affine Smith-Waterman sequence alignment algorithm optimized for Intel Pentium 3, Pentium 4 and AMD Athlon64 and Opteron CPUs.

On Linux and Windows, Aligner is an order of magnitude faster than SSEARCH.

If you are interested in Aligner and would like to evaluate it, please fill out our evaluation form

Requirements

CPU: Pentium 4, Pentium 3, Opteron, or Athlon64
OS:Linux or Windows.
Fast.